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Publication bias was examined using analyses described by Egger and Begg [ 9, 10].
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Primers and probes for the Bacteroides analyses were conducted as described by Dick and Field (2004), and analyses were conducted using conditions described by Haugland et al. (2005).
Specimens were collected and analysed using the methods described by Game and Caley [ 32].
Interview transcripts were then analysed using coding methods described by Creswell and Clark [ 19].
The raw data was analysed using a method described by Pfaffl [ 64].
Qualitative data were analysed using theoretical domains described by Michie and colleagues.
The samples were further analysed using the PCR RFLP described by Geysen et al. (2003).
The agreement between the two imaging modalities and pathology was analysed using the methods described by Bland-Altman.
Tumour perfusion, vascularity and oxygenation were analysed using the system described by Rijken et al (1995, 2000).
The resulting sixteen transcripts were analysed using template analysis, described by King [ 30] as a technique for organising (the relationships between) themes emerging during the analysis of (large sets of) textual data, which is particularly effective for comparing the perspectives of different groups.
These analyses were performed using the methods described by DeLong et al. (17).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com