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aureus GTB using an established quantitative PCR.
The presence of DNA double strand breaks was evaluated using an established quantitative indirect immunofluorescence-based approach (McManus and Hendzel 2005).
To verify the specificity of the constructs as well as to ensure that no compensatory effect involving increased expression of the others isoforms occurred, a secondary screen was performed at the mRNA level, using an established quantitative RT-PCR protocol (Czechowski et al. 2004).
Because this mutation did not impair caspase-8 cleaved recombinant BID (cBID) integration in purified mouse liver mitochondria (MLM) (Wei et al., 2000; Figure S1D), we could measure its biological activity using an established quantitative, specific cytochrome c release ELISA (Scorrano et al., 2002).
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Histologic examination of tissue: Organs of athymic male mice stained with hematoxylin and eosin, trichrome, or giemsa were microscopically examined by a mouse pathologist (L.L.) in a blinded fashion, and toxicity scored using an established semi-quantitative histological scoring system38 (Supplementary Fig. 8).
Using an established, semi-quantitative scoring system, FITC staining of the corneal/conjunctival surface was evaluated by slit-lamp microscopic eye examination of each eye (n = 10), and the corneal and conjunctival areas were scored on a scale of 1 to 4 (shown in Additional File 6) by an observer unaware of the type of treatment given to each mouse.
This is essentially a generalized animal model, an established quantitative genetic method that has been used extensively to model biological and disease phenotypes.
Primers for quantitative reverse transcriptase PCR (qRT-PCR) were designed and tested for SYBR Green chemistry using an established in-house protocol [ 57].
Furthermore, instead of zymography, which identifies isoforms, we now used recently established quantitative bioactivity assays (BIAs) and specific antigen enzyme-linked immunosorbent assays (ELISAs) for MMP-2 and MMP-9.
To address this we used a set of established quantitative tests to assess behavioural and physiological phenotypes in mice (Hockly et al., 2003 a, b, 2006).
were tested for the presence of NV genogroup (GG) I and II infection using a sensitive and well established quantitative RT PCR method.
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