Sentence examples for using all available SNPs from inspiring English sources

Our first experiment measured the prediction accuracy of our NN algorithm using all available SNPs.

With the top 747 SNPs, we recovered the main population structure as the structure above obtained using all available SNPs.

We extracted the genotypes corresponding to CEU and TSI individuals from HapMap release 27 (built 36) raw data and then used our NN prediction algorithm to predict coordinates for the samples using all available SNPs as well as panels P1, P2, and P3.

Genetic differentiation between populations was estimated using Genepop 4.0 software [ 31] using all available SNPs.

As a benchmark, a model using all available SNPs was tested as well.

Results for Bayes A and RKHS regression using all available SNPs were similar, attaining an average Spearman correlation of 0.27.

G-BLUP used all available SNPs, whereas BayesB fitted only 400 in each round of the MCMC-algorithm.

In order to avoid bias, we used all available SNPs in a pathway, which can affect the pathway score if some SNPs do not contribute to the signal and introduce noise.

ASD were computed for each pair of individuals using all available SNP information by a simple counting algorithm: for a given pair of individuals i and j, ASD was defined as 1-xij where xij represents the proportion of alleles alike in state averaged over all genotyped SNPs.

Genotyping data are given in additional file 3. ASD were computed for each pair of individuals using all available SNP information by a simple counting algorithm: for a given pair of individuals i and j, ASD was defined as 1- x ij where x ij represents the proportion of alleles alike in state averaged over all genotyped SNPs.

Bayes-R, RR-BLUP, SVR and PLSR which use all available SNP information performed remarkably similarly; even though these methods are very different from each other.