Its form is obtained as a GLS estimator using a weight matrix of reduced rank unless all available covariates are used.
HLA binding and proteasomal cleavage predictions are performed by an artificial neural networks (ANN) method and TAP transport efficiency is predicted using a weight matrix method.
Given that the Drosophila genome has been sequenced [3] and that the SXL-binding site has been well characterized [20], [21], [22], [23], we searched the entire Drosophila genome using a weight matrix corresponding to the SXL-binding site.
Finally, we used four-way kappa to assess agreement between panels, treating the data as ordinal and using a weight matrix comprising the squared deviations between scores [ 27].
Sverdlov et al. [ 18] constructed a dynamic model of intron insertion by using a weight matrix for the proto-splice sites and inserting introns with a probability proportional to the weight matrix score.
We represent the gene semantic similarity network using a weight matrix G = (g ij) n× n, where n denotes the number of genes and g ij the similarity score between the i-th gene and the j-th gene.
We represent the phenotype similarity network using a weight matrix D = (d ij) m× m, where m denotes the number of diseases and d ij the similarity score between the i-th disease and the j-th disease.
During both kinetic modeling and SPCA we used a weighting matrix which normalizes the difference between the data and the model predictions, by the mean of the concentration values of the species during all the time points.
For predicting the promoter elements recognized by host bacterial σ factor, we used a weight matrix search [ 17, 18].
