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Scansite, using a threshold setting of "high" returns 265 yeast proteins (4.2% of the proteome) as candidate Cdk substrates.
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Thus, diagnosis of positive TP using a threshold set at ≥ moderate pain leads to higher inter-rater reliability than a numeric rating scale only.
To identify SNPs significantly enriched for trans associations with expression, we used a threshold set at the 95% percentile of significant probe association counts across all SNPs (i.e., SNPs that showed associations with at least 30 transcripts, Figure 1C).
An ROI is placed in the abdominal aorta; density tracking is used with a threshold set at 180 HU and 3-s delay.
In principle, for weighted graphs one could eliminate connections that may be present by chance using a threshold to set all non-significant values to zero.
F1-scores, however, are generally higher using the upper quartile threshold, although intuitively one may expect a decrease in performance when using a looser threshold setting, as retrieving more interactions typically introduce more noise into the prediction performance.
To avoid generating misguiding statistics by including identical or highly similar sequences, CD-HIT [ 16] and BlastClust [ 17] were applied using by a threshold setting of 25%and60%0% respectively.
NN was run with two configurations: first, using all defaults and then using a weight threshold set to the inverse of the input sequence length.
In order to facilitate comparison among them, we controlled the numbers of significant edges detected by LA, NEN, EN and CREN same as that of REN by using a threshold value, that is, set to 0 all edges whose coefficients are lower than the threshold.
For the experiments using focal application of agonists, a threshold set at ∼2 3 times the standard deviation of the derivate trace was used to detect activity.
3) Flattened images were converted into binary maps of aggregate locations by using a height threshold (set at ∼1 nm).
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