Sentence examples for using a suffix tree from inspiring English sources

We implement the exaction of the regular sub-sequences using a suffix tree [26].

Gusfield et al. [ 1] presented an optimal solution for APSP using a suffix tree [ 3].

This is achieved by a pattern-driven search using a suffix tree of the given sequences.

Transcription factor binding sites were predicted using a suffix tree algorithm [ 22, 23].

This solution has the same time complexity as the solution obtained using a suffix tree, but it is faster and consumes much less space.

Abouelhoda et al. [ 6] showed that any problem that can be solved using a suffix tree can also be solved using an enhanced suffix array with the same time complexity.

The second step uses a suffix tree (FP-Tree) structure to encode transactions without generating candidate sets explicitly.

The ARB aligner uses a suffix tree search method and the greengenes aligner has used either a kmer searching method or blastn.

Although specific details are lacking, the aligner uses a suffix tree to find related reference sequences and that the actual alignment step uses multiple reference sequences and secondary structure information to carryout the alignment.

The algorithm uses a suffix tree where nodes are annotated with symbols of the employed regular expression syntax, which means the character groups.

In the following section, we describe how we use a suffix tree and a statistic on read coverage to find erroneous reads and correct them using the sequences they overlap.