Sentence examples for using a stringency threshold from inspiring English sources

Modules were grouped using a stringency threshold of 0.75.

In other words, using the trend for nonspecific genes at lower stringency levels, a stringency threshold was chosen that was high enough to consider 90% of the genes highly expressed in either fetal liver or placenta to be specifically derived from that tissue and not be a statistical artefact.

With a stringency threshold of 0.75, a total of 10 modules were identified from petunia corollas using WGCNA (Additional file 3).

To overcome the relatively high stringency imposed by the maximal clique method, the Quasi Clique [ 7], Molecular Complex Detection (MCODE) [ 12], Spirin and Mirny [ 11] algorithms identify densely connected subgraphs rather than fully connected ones by either optimizing an objective density function or using a density threshold.

After hybridization the membranes were washed twice using a low stringency buffer (2× SSC, 0.1% SDS), and a high stringency buffer (0.1× SSC, 0.1% SDS), for 15 and 5 minutes at 48°C, respectively.

As with Tm-matched probe-sets, processing microarrays at multiple stringencies resulted in higher success rates than when using a common stringency (compare strategy 5 and 8 in Figure 4).

Amplification was performed in a thermal cycler (Appendorf) using a high stringency PCR protocol with high annealing temperature to ensure specificity of amplification.

The CB maps for each contig with 2 or more Q clones were recalculated using a higher stringency cutoff value.

SNPs were called using a simple thresholding.

The absence of NPM-related proteins in thirty-seven diverse plant species with sequenced genomes was confirmed using PLAZA 3.0 Dicot and PLAZA 3.0 monocot comparative genomics platforms (http://bioinformatics.psb.ugent.be/plaza/) [ 60] using BLASTp at a low stringency threshold (expect: 1).

using an arbitrary threshold.