Sentence examples for using a standard variant from inspiring English sources
Finally, variant calling is performed using a standard variant caller like GATK or specialized tools such as VarScan 2 [ 21] and MuTect [ 22].
The BAM file was subsequently used to call the corresponding variants by the Torrent Variant Caller (TVC3.6.2) plugin using a standard workflow entitled "Germ Line - High Stringency".
Using a standard alignment-based Genome Analysis Toolkit (GATK), we find 62,000 76,000 additional variants in amplified samples.
A variant backward-stepwise model-building method was used: First, a model was built for the overall data using a standard backward-stepwise method (Armitage et al. 2002) and a standard exclusion criterion of p-values > 0.05.
He denied using a standard background.
using a standard sizing gradient.
Participants responded using a standard computer keyboard.
Variants strongly associated with the neurosarcoidosis phenotype (P < 1 × 10−6) were examined for functional activity using a standard query into the RegulomeDB webserver.
Avoid using a standard electrical box.
Duplicate reads were removed and single nucleotide polymorphisms (SNP) and insertion/deletion (INDEL) discovery and genotyping was performed on all samples individually using the GATK HaplotypeCaller producing a standard variant call format (VCF) [ 20].
