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We hypothetically 'immersed' the molecule in an aqueous solution bounded by a cubic box, and performed energy minimization of this system using a simulated annealing method (with annealing temperatures 425K, 375K, 325K, 275K, 245K, and 203K scheduled at time points 0, 100, 200, 300, 400, and 500 picoseconds, respectively) to a force tolerance of 10∧-3 kJ mol nm.
The 14 minimal hitting sets were also found using a simulated annealing algorithm (Methods, simulated annealing).
Here, we have developed a method of identifying the reaction diffusion system of fluorescently labeled signaling molecules in the cell, by combining spatio-temporal correlation function analysis of fluctuating fluorescent patterns, stochastic reaction diffusion simulations, and an iterative system identification technique using a simulated annealing algorithm.
The problem was solved using a simulated annealing heuristic.
The network reduction problem is solved using a simulated annealing algorithm.
A close to optimal network is then looked for using a simulated annealing optimisation.
Optimization of a composite absorber using a simulated annealing algorithm is presented.
This paper presents a new landscape management model using a simulated annealing approach.
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By using a simulated annealing-inspired methodology, the simulated annealing like (SAL -method, where tree topologieSAL -methoded often in the beginning, but henceforth more rarely, wheren avoid getreeg stopologiespareicular local optimum tree.
Biclusters are extracted from this binary edge matrix using a simulated annealing-based approach.
Consequently, we applied a global optimization scheme that had the following steps: (1) generate an initial random population of (40 x p) parameter sets that satisfy constraints using a simulated annealing-based algorithm, (2) submit the population to a 50-generations genetic algorithm optimization, and (3) refine the best solution using a trust region reflective algorithm.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com