Sentence examples for using a seed length from inspiring English sources

Mapping to the genome was performed using a seed length of 30 bp and allowing up to 2 mismatches within the seed.

For all sequence species, background SMD distributions were computed using a seed length of six and matches on both strands [ 7].

The Seeder algorithm was used to perform motif prediction in seed-specific promoters using a seed length of six and a motif length of 12, and the 'protein-coding with transcript support' gene promoters as a background.

For annotation purposes, the 74 75 bp reads from GAIIx sequencing were mapped with SOAP2 (version 2.20) using a seed length of 40 bp and allowing up to 5 mismatches throughout the whole length of the reads.

We tested using seed length (allowing for the piRNA to extend past the repeat-masked sequence), but saw minor differences using a seed length of 16 and not using a specific seed.

Reads were aligned by using a seed length of 50 bp, and only the single best alignment per read with up to two mismatches was reported in the SAM file.

The very-sensitive-local setting of Bowtie 2 uses a seed length of 20 nt for the alignment, and the –N1 command allows for only one mismatch on that seed alignment.

The Seeder algorithm was used to perform motif discovery in SSP gene promoters using a seed-length of six and a motif length of 12.

Shrec (Schröder et al., 2009) was the first approach that uses a variable seed length for read overlap and error-detection computation.

The Bowtie mapping algorithm was used to map short reads with a seed length of 18 and a maximum of three allowed mismatches in the seed.

Reads were mapped with BWA [ 23] using a polymorphism limit of 4% and a seed length of 28 bp.