Sentence examples for using a second blast from inspiring English sources

Exact(2)

In order to identify the complete set of T6SS components in all the species of each organism, each of the T6SS component identified in a particular species of an organism was then used to search for their orthologs using a second blast search against its other species for which complete genome sequences were known.

Our bioinformatics strategy, using a second BLAST stage to detect these cases worked well overall, but a number of such cases did escape the initial automated analysis, and have been corrected by manual merging of alignments.

Similar(58)

The CTL cell lines were generated using a second stimulation with irradiated, autologous PHA blasts pulsed with the reactive cA1 peptide.

These 240 best-hit yeast proteins were then used as the query in a second BLAST against the entire human proteome.

A second BLAST search used NCBI's yeast database (yeastDB) [ 39], which is a single curated set of Saccharomyces cerevisiae protein sequences available at the NCBI's RefSeq database.

Instead of then taking the LCA of the retained matches, a second BLAST search is done using the best BLAST match as the query, and all sequences above the p threshold plus the original query sequence as the new reference.

For detecting distant homologs we used sequences from 25 organisms as seeds for a second BLAST search.

First, using a self-BLAST and an SGN Perl script (precluster.pl), we implemented a pre-clustering phase of the EST sequences with a minimum identity percentage of 90% and a minimum alignment length of 30 bp.

A fourth blast near a cinema killed one person.

For the first we use a blast furnace, the second a rolling mill.

It appears the bombers used the first blast to lure police to the scene before setting off other explosives.

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