Sentence examples for using a search template from inspiring English sources
This is achieved without any filtering, using a search template of size 21 × 21, and a number of clusters equal to 1/200 of the total number of training patterns.
Currently (October, 2014), almost 7500 sequences are found in the InterPro database of EMBL-EBI (http://www.ebi.ac.uk/interpro) when "chlorite dismutase" is used as a search template.
Firstly, the authors use as a search template SELEX-generated aptamers, while none of known natural riboswitches resembles in structure artificially synthesized aptamers for the same compounds.
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Data were processed using XDS[ 39] and software from the CCP4 suite.[ 40] The structures were solved by molecular replacement with the program Phaser[ 41] using PDB 3NX2[ 24] as a search template.
As it is clear in Table 3, the least accurate result of K-means cases is obtained using KNN as filtering method, a search template of size 17 × 17, and a number of clusters equal to 1/800 of the total number of training patterns (i.e., a total number of 7,176 scanned patterns).
Finally, the most accurate E_type of Spectral cases is shown in Fig. 6e; using PCA as filtering method, a search template of size 17 × 17, and a number of clusters equal to 1/200 of the total number of training patterns has led to the most accurate result obtained through application of Spectral clustering.
Structures of MtbHadAB bound with flavonoids were solved by molecular replacement (MR) method with Phaser program (McCoy et al., 2007) in CCP4 (Potterton et al., 2003), using the native MtbHadAB structure as a search template.
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