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The 247 remaining biological candidate genes were then prioritized using a scoring scheme based on the origin of the data and OMIM phenotypes (Supporting Information S1).
Relative sensitivity values were generated using a scoring scheme that allocated values of 4, 3, 2, or 1 depending on the concentration of agent where strain sensitivity was identified; 4 is allocated to the lowest, and 1 is allocated to the highest concentration of damaging agent in the plate.
This goal is achieved by using a scoring scheme whose statistics can be theoretically characterized.
Our approach is to approximate positional homologs as bidirectional best hits using a scoring scheme that integrates both sequence and gene context similarity scores.
The students were observed and scored by the tutor individually in the subgroup while performing examination on SimMan or on each other using a scoring scheme which is used to assess them during OSCE.
Pairwise sequence homology search programs 1, 3 evaluate alignments between sequences by using a scoring scheme that includes a 20 × 20 amino acid substitution matrix and a penalty function for gaps.
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For this assessment we used only their links derived from homology data, which uses a scoring scheme based on E-values obtained from the Smith-Waterman algorithm with a reasonably strict cut-off score to ensure high quality matches [28].
Collins et al. [ 15] used a scoring scheme called purification enrichment (PE) to analyze the combined purification data.
To clearly signify that these should not be over-interpreted as probabilities, we use a scoring scheme that ranges from one star (lowest confidence) to five stars (highest confidence).
TargetFinder uses a scoring scheme that charges a penalty of 1 for a mismatch or insertion/deletion and a penalty of 0.5 for a wobble base pairing, and it doubles these penalties for base-pairs in the seed region (the 2-7 nt from the 5′-end) of a miRNA.
The complexes were also scored using a hybrid scoring scheme, which was designed as GoldScore weighted with similarity scores (Kortagere et al. 2009).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com