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Statistical significance of the association was computed using a score test that yields a standard normal z-statistic [23].
Association between haplotypes and the phenotypes were calculated using a score test implemented in the computer program HAPLO.SCORE [32].
Haplotypes were estimated and tested for association with disease status using a score test with haplotypes coded in an additive fashion (42).
A single-SNP based GWA scan was performed in each population using a score test method (based on the additive model) implemented in the mmscore function in the GenABEL package.
Secondly, we analysed each SNP using a score test from a linear mixed model (38), allowing for possible relatedness between individuals via consideration of their genome-wide estimated kinship coefficients, using the 'mmscore' function in the R package GenABEL (39).
Haplotype frequencies were also estimated within each gene and a global haplotype score test of association between haplotypes and ovarian cancer risk was conducted at the gene level using a score test [ 32].
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For dichotomous traits, MB-MDR uses a score test, in particular, the Pearson's chi-squared test.
GRAMMAR uses a score test to identify associations between SNP genotypes and trait residuals after fixed and background genetic or polygenic effects are accounted for in the linear mixed model (2).
Thus, although use of a score test allows one to use an approximate logistic model, our results suggest that in practice this logistic model approach confers little benefit over the linear model.
Band et al. (2013) also used an approximate Bayes Factor as a complement to the use of a score test.
Capsule production was determined using a scoring system through testing the ability of each strain to form mucoid colonies in LB agar and in CLED agar plates using two incubation temperatures, 37°C and 25°C.
More suggestions(15)
using a score matrix
using a pregnancy test
using a pseudoscore test
using a fire test
using a dissolution test
using a breath test
using a randomization test
using a dipstick test
using a skin test
using a residence test
using a score cutoff
using a scratch test
using a score threshold
using a score function
using a permutation test
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