Sentence examples for using a relaxed lognormal from inspiring English sources

Posterior phylogenies were determined in *BEAST using a relaxed lognormal clock model and the prior was set to the default option of Yule process [ 83].

Following Drummond et al. [33] we decided to use a relaxed lognormal clock and a piecewise constant skyline model for our skyline plots.

Substitution rates were estimated using a relaxed uncorrelated lognormal molecular clock [34].

Analysis was conducted by using a relaxed (uncorrelated lognormal) molecular clock and a generalized time reversible + Γ + proportion invariant model (6 ).

These analyses revealed the Sylvia cyt- b data are not clocklike, therefore our substitution rate was enforced using a relaxed, uncorrelated lognormal clock.

3) from analyses using a relaxed clock with lognormal and exponential settings, and inferred ancestral areas at internal nodes (RASP) and branches (DEC; relative probability of an area reported for branch leading to numbered node).

The Monte Carlo Markov chain method available in the BEAST package v1.7.1 was employed, using a relaxed clock model with uncorrelated lognormal distribution and the Bayesian skyline coalescent model.

The tMRCAs of the full dataset and of major clusters were determined by the Monte Carlo Markov chain (MCMC) method available in the BEAST package v1.7.1, using a relaxed clock model with uncorrelated lognormal distribution and the Bayesian skyline coalescent model [ 24].

Thus, for only 43 (19.3%) of the Slovenian patients infected with subtype B no local epidemiological link was observed by phylogenetic inference (Table  2).> -wrap-foot>> -wrap-foot> NOTE: The Bayesian analysis was performed in duplicate by using a relaxed clock model with uncorrelated lognormal distribution and Bayesian skyline coalescent model.

Secondly, we used a relaxed (uncorrelated lognormal) molecular clock method [68] as implemented in BEAST version 1.4.6 [69].

The analysis used a relaxed (uncorrelated lognormal) molecular clock and GTR + Γ + I model of nucleotide substitution.