Sentence examples for using a relaxed cutoff from inspiring English sources

This HMM is used in a HMMER search of the input protein set [HMMER 2.3.2 (Eddy, 1998)] using a relaxed cutoff (HMM E-value for candidate selection, Table 1; Fig. 1.1), resulting in a reduction of the search space for subsequent steps by ∼95% without loss of divergent kinases.

Using a relaxed RPKM cutoff of one, we identified 6,994, 6,219, and 9,640 clusters from individual S7963, S7964, and S9217, respectively (note that our sequencing depth varied between samples).

BLAST searches were performed using NCBI BLAST 2.2.19 [ 80] and the GenBank, EMBL, DDBJ, and PDB databases as of Oct.28, 2009, using a relaxed E-value cutoff of E = 0.02.

Substitution rates were estimated using a relaxed uncorrelated lognormal molecular clock [34].

Here, the ellipses were calculated using a relaxed criterion, outlining an area of just 50% probability.

Divergence time estimates among seahorse lineages were obtained using a relaxed molecular clock method [ 58].

Continue moving up scales a half-step at a time, using a relaxed jaw and tongue.

Using a more relaxed cutoff of 1°, over 50% (i.e., 70%, 51%, and 60%) of the structures are nonplanar.

To filter the arrays, the genefilter package was used: first those probesets with low variance across samples were removed, and then probesets with little variation between treatments or high levels of noise were filtered out using an Anova filter with a relaxed cutoff of P = 0.20.

Our method is mainly based on ranking the CMS scores, thus we used a relatively relaxed cutoff (CMS = 10) to define the top SNPs.

A relaxed cutoff of 2.24, corresponding to a weaker motif (0.1 probability of occurring by random chance) was also determined.