Sentence examples for using a reference database from inspiring English sources

This procedure is compared to a linear model built from the spectral clay index and calibrated using a reference database.

Representative OTUs were assigned to a taxonomic identity using a reference database.

The GIs prediction tools integrated in IslandViewer were validated by Langille et al., 2008 [ 33] using a reference database of 675 genomes and based on comparisons with at least three closely related genomes.

Given a metagenome sample that has been functionally annotated using a reference database, it is possible to examine the profile of many or all functional categories of proteins, as has been performed by DeLong et al.

Concerns have been raised regarding the use of 454 pyrosequencing for determination of taxonomic abundance, due to the biasing effect of using a reference database or to the amplification step required in DNA preparation for pyrosequencing.

For these ORFs, frameshifts were corrected, if possible, by identifying and aligning the closest homolog with BLAST [ 35], using a reference database consisting of all genes present in all sequenced bacteria.

We use a reference database (RefSSU) of full-length SSU genes of known taxonomy based on the SILVA database [13], and excise the V9 region using the SILVA alignment to create a reference database of V9 sequences (RefV9).

We used a reference database consisting of 23,875 sequences describing 380 known resistance genes for 90 different modes of resistance and compared the relative abundance of matching genes using a Poisson linear model [24].

Pintail and Mallard are 16S-specific programs that use a reference database of trusted chimera-free reference sequences.

RITA uses a reference database to assign a taxonomic classification to sequence data using both homology and nucleotide composition.

Our method uses a reference database to guide construction of a metagenomic read tree for a gene family.