Sentence examples for using a reciprocal blasting from inspiring English sources
Orthologous relationships between genes were defined in the initial comparative genomic analysis [ 7] using a reciprocal BLASTing method and this information is available via the T. annulata genome browser [ 19].
Here, we grouped the proteins predicted from S. sulcatum transcriptome with four ciliate genomes (Oxytricha trifallax, Tetrahymena thermophila, Ichthyophthirius multifiliis and Paramecium tetraurelia) using a reciprocal BLAST hit (RBH) approach.
This makes it more difficult to successfully crosscheck hits using a reciprocal BLAST as the number of unknown matches returned as top hits increases.
Cognate rainbow trout expressed sequence tags (ESTs) were subsequently identified using a reciprocal blast search strategy.
Those murine ESTs were subsequently used to identify cognate rainbow trout (Oncorhynchus mykiss) ESTs using a reciprocal Blast search strategy.
Putative V. macrocarpon TF were identified using a Reciprocal Blast Hit utilizing BLASTP with a cut-off < 1E-20.
BHLHO domain genes and Brd-class genes were identified in arthropod genomes using Blast [ 69], with orthology assigned using a reciprocal blast best-hit approach.
We further compared the wild barley transcripts with cultivated barley genes using a reciprocal BLAST hit (RBH) approach to identify putative orthologs (Table 3).
Using a reciprocal BLAST hit approach [ 32] orthologous genes from three other vertebrates zebra finch, anole lizard, and human were also obtained.
Identification of aminopeptidase genes related to the S-LAPs in other insects was conducted using a reciprocal blast approach where the eight S-LAPs were first compared to a combined database of RefSeq, non-RefSeq and ab initio coding sequences from A. gambiae, C. quinquefasciatus, A. aegypti, T. castaneum, N. vitripennis, A. pisum and A. mellifera using Tblastx.
The feline T. foetus transcriptome had a mean contig length of 806.6 bp with a minimum length of 201 bp and a maximum of 17,195 bp in length.> Homologous transcript pairs between the bovine and the feline genotypes were identified using a reciprocal blast.
