Sentence examples for using a profile search from inspiring English sources

These data were obtained using a profile search with JExpress software [ 21].

Searches using a profile HMM (Durbin et al. 1998) for duf1676 against the NR protein database gave us consistent results.

To confirm the protein identity, sequences were subjected to a profile search using Pfam [ 48].

Consequently, we used a profile hidden Markov model (HMM) search strategy, which enables sequences with more remote homology to be detected [ 41].

The domains have been identified using different profile search methods with stringent search parameters as described in the section on Materials and Methods and have also been manually checked for the conservation of key motifs.

Putative protein kinases are detected using a combination of profile search methods.

We have tried to find a good starting point for the random walk by using profile search.

Using sequence profile searches we identify a novel domain in these proteins that is widely conserved across eukaryotes and bacteria.

The remaining non-core proteins are then confirmed using the consensus profile search against the respective proteome.

In the current analysis, using various sensitive profile search methods (discussed in Materials and Methods section), we report 918 putative human protein kinase gene products (Additional file 1).

After normalization and statistical analysis of data, 631 differentially expressed genes were sorted into clusters based on their levels and kinetics of expression using Spotfire® profile search and K-mean cluster analysis.