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(c) The sensitivity and specificity of each module to predict patients' colitis status by their faecal microbial samples was determined using a probability threshold of 50%, as compared with the four-module model.
It is assumed that the preferred range is where probability is 1, outside the range limits is where probability is 0, and between these two thresholds the relative environmental suitability decreases linearly11.The focus of our results are using a probability threshold value of 0.5 or greater.
Therefore, a paired two-tailed Student's t test was used to evaluate uptake differences between ER+ and their corresponding (in the same animal) ERαKD tumors using a probability threshold of p = 0.05 for significance.
Using a probability threshold of 0.5, logistic regression correctly classified 59.3% of individuals.
We subsequently mapped the richness of these species using a probability threshold of more than 0.4, which usually corresponds to the most frequently used and ecologically most important habitats [112].
For the PHG, we used posterior PHG from the Harvard Oxford Cortical Atlas, defined using a probability threshold of 50%.
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For the prediction of marine mammal biodiversity, we used a probability threshold of species occurrence of at least 0.4 to define presence in a given area, since there is some evidence that lower probabilities for species in this taxa often describe a species' potential rather than its occupied niche [112].
In evaluating the performance of our scoring system, we used a probability threshold of 0.5 (equating to a score of 3.06) for a positive molecular diagnosis.
We used a probability threshold of 0.01 (including pathways with a less than 1 in 100 chance of containing that number of mutant genes), and focused on cellular pathways from Kegg, Biocarta and Reactome (Methods section).
We used a probability threshold of Q = 0.8, which is equivalent to an odds of 4 1 (P1/P0), which means that the gene is four-fold more likely to be differentially expressed than non-differentially expressed.
Using a probability of membership threshold of 70%, 164, 29 and 17 lines were assigned into the three groups, respectively.
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using a probability sampling
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using a stringency threshold
using a probability scale
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using a correlation threshold
using a probability tree
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using a probability theory
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