Sentence examples for using a pipeline described from inspiring English sources

This study applies these features and classifiers using a pipeline described in Fig. 1.

> -wrap-foot> Genome-wide annofatransposablensposablelementsTEs(TEs) for both genome assemblies were completed using a pipeline as described (Paterson et al. 2012).

These primary and secondary data were then used to generate tertiary data such as conservation of gene order in genomes, orthologous relationships between proteins, phylogenetic relationships using a pipeline recently described (Lemoine et al., 2007).

GRO-seq data were processed and mapped using a computational pipeline described previously [ 13], with limited modifications.

To provide a comprehensive catalogue of small RNA-generating loci in the procyclic T. brucei YTat 1.1 strain [ 25], we subjected RNAs associated with TbAGO1 to next-generation sequencing on the Illumina platform and the distribution of siRNAs along the T. brucei 11 mega chromosomes (GeneDB version 5) was analyzed using a bioinformatics pipeline described in Methods.

A pipeline described previously (Cooper et al. 2010) was used.

CLE-like or C-terminally encoded peptide-like (CEP) motifs were identified from the N. aberrans transcriptome using a pipeline similar to that previously described (Bobay et al. 2013).

Gene trees in C. reinhardtii were defined using the pipeline described in Zou et al. (2009) using a set of protein domains defined using PFAM (Punta et al. 2012).

The list of candidate genes has to be uploaded as a txt file and information retrieval is done using the pipeline described above (also including the gene count).

Next, we reconstructed trees using the pipeline described in [ 46].

Phylomes were reconstructed using the pipeline described in [ 82].