Sentence examples for using a phylogenetic placement from inspiring English sources

The Ranomafana National Park study only presents anecdotal evidence of the errors Séance can avoid thanks to using a phylogenetic placement strategy.

First, the HTS reads are aligned to a backbone alignment [ 71, 72], subsequently each query sequence is placed into a backbone tree [ 73] using an extended alignment, and finally taxonomy is assigned to each read using a phylogenetic placement approach, such as the Lowest Common Ancestor (LCA) [ 74].

We used Pplacer (ver. 1.1.alpha16) [ 23] as an example of a phylogenetic placement method based on maximum likelihood.

a, Phylogenetic placement of corallicolids, based on mitochondria-encoded proteins.

a, Phylogenetic placement of short-amplicon OTUs (red) and near-full-length sequences (black), which show the diversity of the type-N clade.

Several methods have been provided with WG-FAST to help a user assess the robustness of a phylogenetic placement.

In order to help resolve the general phylogenetic placement of sablefish we sequenced its mitochondrial genome and used a phylogenetic tree analysis to compare it to other Percomorpha and Scorpeaniformes.

Séance uses phylogenetic placement as a proxy for phylogenetic inference on the complete marker gene.

However, in general, one might use phylogenetic placement to determine whether use of the lineage model was appropriate.

Séance does not infer a phylogenetic tree directly from the cluster centroid sequences but rather uses Pagan's phylogenetic placement capabilities to insert these sequences into a fixed reference tree.

All unknowns are then inserted into the phylogenetic tree using an evolutionary placement algorithm (EPA) method in RAxML [ 26]; this method assigns unknowns to edges of the phylogeny based on a maximum likelihood algorithm.