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We estimated this null distribution using a permutation bootstrap, in which we randomly swapped the assignments of ai and bi and recomputed AUC a)–AUC(b).
We computed the probability that m of the n predictions would fall within fifty kb of some target genes using a permutation bootstrap.
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P values were computed using a permutation test (10,000 permutations).
The difference between the two sets of residuals was tested using a permutation approach (10,000 permutations).
The pfp is calculated using a permutation based procedure (100,000 permutations were conducted).
The significance of differentiation was examined using a permutation test with 1000 permutations.
We estimated a genomewide significance threshold using a permutation procedure.
Variance was estimated using a permutation testing approach.
The number of joinpoints was verified using a permutation test.
The overall significance is then evaluated using a permutation procedure.
Significance of the correlation was determined using a permutation test.
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