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The presence of each TE was tested in six pools of 8 12 North American strains (Table 1, rightmost column) using a PCR procedure custom-designed for each chimeric TE (see Methods for details).
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Genomic DNA was genotyped by using a PCR-based procedure.
Briefly, a cDNA library was screened for putative homologs using a PCR-RACE procedure with primers designed to match conserved regions of GOT proteins from a range of species.
The Kv3.1 knockout (KO) mouse line was kindly provided by Dr. R. Joho at UT Southwestern Medical Center and has been maintained using a PCR-based genotyping procedure as previously described [ 37- 39].
To optimize PCR at various annealing temperatures, we evaluated each primer pair using a gradient PCR procedure.
Then, specific primers for the T-DNA and specific primers for the adaptor sequence were used to amplify the unknown flanking sequences using a conventional PCR procedure.
IGS sequences were amplified by using a nested PCR procedure (30 ).
For B. burgdorferi, a 941-bp region of the 16S-23S rDNA spacer was used as a target for amplification using a nested PCR procedure (12).
Amplification of viral genome was performed using a nested PCR procedure, and patient-derived HIV-1 RT fragment carrying K101Q/Y181C/H221 replaced the partner sequence (2843 nt-3485 nt, 643 bp) in pNL4-3 pol to construct the first clone as previously described [ 29].
Amplification of viral sequences was done in a 0.5-ml Eppendorf tube using an immunocapture PCR procedure described previously [ 16].
In addition we detected induction of miR-210-3p miR-210-3p miR-210-3pRT-PCR procedupon
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