Sentence examples for using a multiple sequence from inspiring English sources

All the sequences aligned to the same cluster were visualized using a multiple sequence alignment program.

Using a multiple sequence alignment generated with the MUSCLE algorithm [23] (Fig. S1), the natural sequence variability of individual amino acid positions was assessed for the 50 lysozyme orthologs.

Using a multiple sequence alignment of nsp4 from representatives of the genus Coronaviridae, together with TMHMM and Tmpred predictions from the primary sequence, we successfully designed the construct of this highly conserved hydrophilic domain of MHV-A59 nsp4.

Using a multiple sequence alignment of the transmembrane (TM) domains, we calculated the mutual information between all inter-TM pairs of aligned positions and ranked the pairs by mutual information.

Using a multiple sequence alignment it is possible to identify amino acids that co-occur among homologous sequences.

These million proteins were analyzed using PONDR® VL-XT disorder predictor and regions of sequence corresponding to domains were aligned using a multiple sequence alignment tool.

These studies use a multiple sequence alignment to represent the evolutionary history of a protein, gene, chromosome, or genome.

We used a multiple sequence alignment that includes both the homeodomain and the additional conserved domains (Additional file 2).

We used a multiple sequence alignment program PRALINE (http://www.ibi.vu.nl/programs/pralinewww/) to align all the fungal MIP sequences [ 83].

The maxAlike algorithm uses a multiple sequence alignment and a corresponding phylogenetic tree, annotated with phylogenetic distances on the branches, to estimate mutation rates for each alignment column.

To minimize this problem, we used a multiple sequence alignment with information of only the OS-E and OS-F genes.