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An improvement in convergence and BER performance is achieved by using a minimum bit error rate (MBER) cost function instead of a conventional LMS-based design.
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Unassigned mRNA reads were further analyzed by a BLASTX to the complete NCBI protein database, protein sequences of the MetaHIT database [ 35] and human small intestinal metagenome databases [ 4] using a minimum bit-score of 40 (Additional file 5: Figure S3B).
Because the only statistical difference between bit scores and e-values is the consideration of the total length of subject sequences which is constant for each benchmark and the length of the current query sequence which only varies a little throughout each benchmark we chose to use a minimum bit score instead of a maximum e-value as cutoff.
Further bits are requested until the estimated bit error rate drops below a given threshold, then each coefficient value is reconstructed using a minimum mean square error estimator, and the IDCT returns the decoded Wyner-Ziv frame.
There was no way to track frame rate or other statistics directly through the phone, which made it difficult to tell what we achieved.Viseon recommends using a minimum broadband connection of 256K bit/sec for upload, warning that a slower connection can produce jitter and latency.
We set the parameters to use the BLOSUM62 matrix and a minimum bit score of 30, and we required that the alignment cover at least 50% of both proteins.
Our E value cutoff created a minimum bit score of 74 which is more stringent that the minimum bit score of 50 which was used by Tsai and co-workers [ 45].
The mRNA reads phylogenetic profiling at genus level was done with reads with a minimum bit alignment score of 148.
"I used a minimum of sunblock.
You have to use a minimum amount of force.
Using this minimum bit score threshold, 78 to 93% of the mRNA reads could be assigned to homologous loci in bacterial genomes using MegaBLAST (65-85%) and BLASTN (8-14%).
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