Sentence examples for using a local installation from inspiring English sources

FASTA protein sequences from Bacillus anthracis Ames Ancestor (AA), Bacillus cereus G9241, and Bacillus cereus 10987 genomes were compared to each other using a local installation of BLAST as follows: AA versus G9241, G9241 versus 10987, and 10987 versus AA.

Proteins were identified by using a local installation of MASCOT 2.2 (Matrix Science Ltd, London, UK).

Sequences were classified using a local installation of the RDP classifier (0.8 cutoff) [ 7].

Relative synonymous codon usage (RSCU) was calculated using a local installation of the graphical codon usage analyser [ 65].

The TBlastX search is performed with default parameters using a local installation of WU-Blast version 2.0 (http://blast.wustl.edu/).edu/

The set of 16710 gene predictions produced by MAKER were subsequently classified using a local installation of Blast2Go [ 33].

We used a local installation of ChEMBL version 14. Extracted fields include preferred name, synonyms, FDA alternative names, trade names, INN, United States Adopted Names (USAN), and United States Pharmacopoeia names (USP).

ChromoZoom uses a local installation of the UCSC Genome Browser to generate and pre-cache tiled PNG images (via Ruby scripts).

We used a local installation of PROPKA 3.1 to obtain estimates of p Ka values from snapshots of the equilibrated system at different stages of the reaction cycle.

To investigate this further we constructed an HMM profile of molluscan Dermatopontin proteins and used a local installation of HMMsearch [ 44] to query this against our translated C. nemoralis transcriptome.

We used a local installation of the Matrix Family Library (Version 8.02, January 2010) and software (Version 8.20 Professional, February 2010) and searched genomic sequences near OR TSSs with all PWMs in the "vertebrate" and "general core promoter elements" categories of the library.