Sentence examples for using a local blast from inspiring English sources

Collembase can be explored library-specific using text queries (e.g. cluster name or BLAST annotation) and by sequence similarity using a local BLAST [ 33] server.

Sequences were compared for identification to their closest matches in GenBank using the NCBI nucleotide Blast search, and to unpublished sequences using a local blast search in the laboratory of R. E. Ricklefs.

balthica [ 24] using a local BLAST database and tblastx (BLAST toolkit v. 2.2.25; [ 32]).

Putative chloroplast and mitochondrial sequences were identified and removed using a local BLAST search against complete sequences obtained from GenBank of Arabidopsis thaliana (L).

Nucleotide alignments were generated using a local BLAST v 2.2.22 installation which were then visualized and analyzed for gene conservation and sequence synteny using the Artemis Comparison Tool (ACT) [ 76].

To identify fosmids in the pool, we initially performed Sanger sequencing of the termini of each fosmid using standard pCC2FOS sequencing primers (Epicentre, UK) and aligned resulting reads with all contigs obtained for a pool using a local BLAST algorithm.

The system for designing wheat EST-derived prisershownshown in the flow chart in Figure 2. In the first step, all cDNA sequences on rice Pseudomolecules were compared using a local BLASTN (stand-alone BLAST) program to search for the single-copy genes.

87.9% of the resulting contigs were subsequently annotated after blasting against the SGN tomato database using a local E-Blast tool.

Nucleotide sequences of the contigs were blasted against the Solanaceae Genomics Network (SGN) tomato database for annotation, using a local E-Blast tool; 3,295 contigs were not annotated.

Using a local version of BLAST (version 2.2.14) [87], BLAST analysis of each contig against GAS M1 (GenBank Accession No. NC_002737) and M3 (GenBank Accession No. NC_004070) genomic sequences revealed the presence of putative M-like protein and C5a peptidase homologues.

FASTA protein sequences from Bacillus anthracis Ames Ancestor (AA), Bacillus cereus G9241, and Bacillus cereus 10987 genomes were compared to each other using a local installation of BLAST as follows: AA versus G9241, G9241 versus 10987, and 10987 versus AA.