Sentence examples for using a likelihood framework from inspiring English sources

Mesquite v 2.5 [60] was used to analyze the ancestral states of the trait maximum body size (TL) as a discrete character (gigantic vs small) using a likelihood framework.

The most likely substitution model was first inferred using a likelihood framework implemented in the software MODELTEST 3.7 [ 43].

In previous work [ 11], we presented two refinement algorithms, both based on phylogenetic information and using a likelihood framework, that boost the performance of any chosen network inference method.

Using a likelihood framework, this new procedure detects the switch in the rate of lineage branching of a tree from interspecific long branches to intraspecific short budding branching and identifies clusters of specimens corresponding to putative species.

Using a likelihood framework, this new procedure detects the point of transition in the rate of lineage branching of a tree from interspecific long branches to intraspecific short burgeoning branching and identifies clusters of specimens corresponding to putative species.

PAML uses a likelihood framework to estimate a parameterization of Ka/Ks, termed ω, to model sequence evolution.

It uses a likelihood framework (Kim and Stephan 2002) to compare the background SFS with that expected under a model of a selective sweep at a predetermined set of sites along the region.

Cohen et al.[ 8] have used a likelihood framework to analyze the binary gene presence-absence vectors for multiple orthologous genes in a set of existing species with completely sequenced genomes.

The models are implemented in a maximum likelihood framework and tested using a likelihood ratio test (LRT).

Initial framework maps for each backcross population were generated using a likelihood odds (LOD) threshold of 7.0 and a maximum recombination frequency threshold of 0.4.

Wright et al. (2005) identified 30 selected genes using a coalescent likelihood framework to assess loss of single nucleotide (SNP) diversity in maize as compared to teosinte in 774 genes [5].