Sentence examples for using a genomic search from inspiring English sources

Pindel analyzes discordant read pairs, taking the unmapped read and performing a computationally expensive split-read alignment using a genomic search space predefined relative to the mapped read.

The design process was initiated by the Agilent High-Definition Probe (HD-Probe) search using a genomic interval list that specifies the 1000 genome exonic regions.

GAL4 binding sites were identified using an exhaustive genomic search for the consensus CGGN11CCG.

Using a homology search based on genomic survey sequence analysis and microRNA (miRNA) secondary structure, a total of 72 porcine differentially expressed miRNAs were identified and then were located in pig genome covering all chromosomes except SSC14 and SSCY, and 14 (19.44%) miRNAs were mapped to SSCX (Table S5).

After completion of sequencing and annotation of the P. tetraurelia genome, 10 new related sequences (Epi 42 to Epi 51) of the epiplasmin family were found (Table 1), using a Blast search on the genomic bank (Paramecium DB [ 11]) according to that described in [ 7].

In this report, we identified a chicken homologue of Gomafu using a comparative genomic approach to search for functionally important and conserved sequence motifs among evolutionarily distant species.

This number is much greater than that previously found for RAR binding sites in Alu elements but that is most likely due to the fact that strict DR1 and DR2 consensus sequences were used for the genomic search [ 17].

The average size and average GC content of CHO contigs generated from reference-guided alignment This assembly set was annotated by comparing CHO contigs against custom genomic databases using a basic local alignment search tool (BLAST) algorithm [ 29].

Using the most sensitive methods available to predict function, we reanalyzed these tdCOGs by using a remote sequence similarity search, and genomic context analysis [94]–[94].

Because the 5.8-kb dmbo deletion lies in a presumed intergenic region, we used BLAST and VISTA genomic search tools to determine whether the deletion region contained sequence elements conserved across species.

The dif-related sequences were identified by using genomic similarity search tools, such as the Basic Local Alignment Search Tool BLASTT) (http://www.ncbi.nlm.nih.gov/sutils/genom_table.cgi) [57] and the YASS DNA pairwise alignment tool (http://bioinfo.lifl.fr/yass/yass.php) [58].