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The relationship between tumour response after RT and simultaneously measured IL-6 and TGF-β1 plasma levels, respectively, was assessed graphically using a dot plot where each dot refers to one follow-up examination.
This region was compared with its ortholog in O. sativa using a dot plot analysis (Sonnhammer and Durbin 1995).
First, a repeat region can be identified using a dot plot program to compare the genomic sequence with itself.
Figures B and C show the typical display of apoptotic cells using a dot plot of FL2 (red) vs FL1 (green).
The genome wide nucleotide identity of phages sequenced here was also compared using a dot plot, which supported the cluster relationships that were derived based on the orthocluster analysis.
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Following the approach of Vision et al. [ 9], we use a dot plot to map the occurrence of two similar sequences located in different genome regions.
We then used a dot plot [ 57] to compare the three C. sativa upstream sequences to each other and to Arabidopsis with parameters set for perfect match on a sliding window of 9 bases (Additional File 6).
The contiguous genomic sequence of the bovine BPI-like locus was aligned with the orthologous region from human using a dot-plot algorithm.
Cells were gated on the Forward versus Side Scatter plot to eliminate debris, and then single cells were gated by using a dot-plot showing the pulse height versus pulse area of the DAPI channel (see Supporting Information Fig. S1).
Figure 3 shows an image of a comparison between the GRCh37 and HuRef Assemblies (Region II in the HuRef assembly corresponds to the sequence from 86,921,230 to 86,960,742 in AC_000146.1) using a dot matrix plotting program http://www.vivo.colostate.edu/molkit/dnadot/.edu/molkit/dnadot/
Outlying observations were also shown, using a dot as the plot symbol.
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