We used a diversity set of B. napus representing eight different germplasm types to sequence genome-wide distributed restriction-site associated DNA (RAD) fragments for polymorphism detection and genotyping.
To correct for diversity among WSP proteins, we also generated three-dimensional models using a diverse set of divergent WSP genotypes, besides WSP from wMel.
Further investigations of this polymorphic [ 25] and transcriptional landscape, using a maize diversity set grown at different iron regimes, might provide extended information about genes underlying iron efficiency not only of the IBM population but of maize in general.
The dataset has been divided into training and test sets using a diversity sampling algorithm.
The top hit compounds from database searching, using the NCI Diversity Set II, with targeting at five potential binding sites of the nsP2 protease, were identified by blind dockings and focused dockings.
The Mabridge database, being much larger than the NCI diversity set used here, is unlikely to be a bottleneck, but it has been observed repeatedly that docking programs differ in their performance depending on the interaction type, e.g. small versus large and hydrophobicversus hydrophilic ligands [ 40].
The paper proposes a method aimed at the qualitative evaluation of spatial diversity of agricultural landscapes using a reduced set of ecological indicators based on land-use vector data.
Herein, we demonstrate the value of NGS in defining the diversity of Salmonella Montevideo using a representative set of environmental, laboratory, food, and clinical strains, some of which have been associated repeatedly with contamination events in several food sources [ 5].
In addition, lines with photoperiod sensitivity and tall stature were under represented in the diversity set used to develop the DArT markers.
The diversity set used to assemble our winter-type B. napus panel was designed to represent the available breeding gene pool in the species [ 35, 36].
