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Automatically picked particles were manually verified using a correspondence analysis based method (Shaikh et al., 2008b).
The association between species and environmental types was assessed using a correspondence analysis.
Putative "outlier" genotypes, defined as genotypes not originating from the focal population under investigation, were identified and removed from the empirical data using a correspondence analysis (CA).
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Finally, we used a Correspondence Analysis (CA) to detect differences in genotype distributions between tadpoles and metamorphs by graphically projecting all the individuals on the space defined by factors extracted on the basis of the similarity of their allelic states.
The former were calculated using Arlequin program v3.1 (Excoffier et al. 2005) and represented in a Multidimensional Scaling plot (MDS) and the latter were used to construct a Correspondence Analysis (CA) plot using STATISTICA 7 package (http://www.statsoft.com).statsoft.com
We also estimate a well-being index using a multiple correspondence analysis (MCA), finding that the correlation at the household level between both indexes (the one obtained using the PCA and the other by the MCA) is over 99%%.
A more descriptive, but very interesting approach consists of using a factorial correspondence analysis.
A search of optimal (Fop) codons was performed using a multifactorial correspondence analysis (CoA) of codon usage implemented in the CodonW software [ 78, 79].
To compare global functional content of the SAC community metagenome to other lignocellulosic habitats and to non-cellulosic habitats, we performed a correspondence analysis using SEED [9] annotation.
We first performed a Correspondence Analysis (CA) using the AFC-3D procedure of Genetix.
Two statistical approaches were used: a Factorial Correspondence Analysis (FCA) and non-parametric statistical tests.
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