Sentence examples for using a computational pipeline from inspiring English sources

Using a computational pipeline based on similarity networks reconstruction we analysed the 1133 genes of the Burkholderia vietnamiensis (Bv) G4 five plasmids, showing that gene and operon duplication played an important role in shaping the plasmid architecture.

We identified 3,750 miRNA candidate genes using a computational pipeline combining RNAfold and TripletSVM algorithms.

GRO-seq data were processed and mapped using a computational pipeline described previously [ 13], with limited modifications.

Computational prediction of AS-NMD was performed using a computational pipeline based on that described previously [ 112, 113].

The accession numbers of the AtFYVE proteins were identified using a computational pipeline for automated high-throughput modeling [ 36], which run against Arabidopsis protein sequence database (TAIR6_pep_20051108).

The A. gossypii secretome was predicted from an analysis of its genomic data, using a computational pipeline (see Materials and Methods) to detect known cellular sorting and localization signals in its putative proteins.

Therefore, we used a computational pipeline to identify lincRNAs acting as miRNA decoys in maize.

We used a computational pipeline, which utilizes several different algorithms and some manual input for the analysis.

In this study, we predicted a total of 2660 D. purpurea mlncRNA candidates using a computational mlncRNA identification pipeline.

Using a computational mlncRNA identification pipeline, we identified 2660 D. purpurea mlncRNA candidates, of which only about 12% can be grouped into families with at least two members in a family, while the others are single gene family members.

We identified 2660 mRNA-like npcRNA (mlncRNA) candidates, an emerging class of regulators, using a computational mlncRNA identification pipeline and 13 microRNA-producing unigenes based on sequence conservation and hairpin structure-forming capability.