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Most users of molecular simulation codes are used to using a command line interface.
Most FTP clients will do this automatically, but if you are using a command line FTP client, use the "bin" command prior to transferring.
Using SPiM, we were able to automate thousands of model simulations using a simple command-line script.
– Would create this list using a pipeline of command line programs.
iMSAT uses an interactive command-line interface (see Figure 1 for a graphical representation).
Kinannote is the only tool currently available that produces a draft kinome using a single line command.
The status of running jobs can be interactively queried and listed using a supplied, easy-to-use command-line tool.
Time to use a command!
When using PHP for command-line scripting, a PHP command-line interface (CLI) executable is needed.
ANNOVAR [ 10] is a command-line tool used to functionally annotate genetic variants.
The program can be used via a web interface, as a command-line tool or as a web service.
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CEO of Professional Science Editing for Scientists @ prosciediting.com