Sentence examples for uses the sequest algorithm from inspiring English sources
The nano LC-MS/MS data (Tarun et al., 2008) were searched against each of the three sequence databases separately using BioworksBrowser 3.1 San Jose Jose, CA, ThermoElectron), which uses the SEQUEST algorithm (Eng et al., 1994).
MS/MS spectra were searched using the Sequest algorithm with serine, threonine, and tyrosine phosphorylation and methionine oxidation as dynamic modifications.
The mass spectral data were searched against the Swiss-Prot databases of human and mouse proteins using the SEQUEST algorithm as part of the Bioworks software (Thermo Scientific, San Jose, CA) with a full tryptic cleavage requirement and a static cysteine alkylation modification.
To identify peptides, data files were generated from the MS/MS scans by Bioworks 3.0 using the SEQUEST algorithm (threshold, 105; minimum group scan 2, Xc >1.0, Thermo Fisher Scientific) and searched against the complete amino acid database derived from the B. pertussis Tohama genome database.
The proteins were identified using the SEQUEST algorithm and Proteome Discoverer (v 1.3, Thermo Scientific).
The CID raw spectra were extracted using Proteome Discoverer 1.4 (Thermo Fisher Scientific) and subjected to database searches using the Sequest algorithm.
Data were searched against the Danio rerio IPI database v3.45 using the SEQUEST algorithm in the BioWorks software program version 3.3.1 SP1.
The MS/MS spectra obtained were correlated with known sequences using the Sequest algorithm developed at the University of Washington [ 25, 26].
To identify histone H1, H2A and H2B peptides, a database search was performed using the SEQUEST algorithm within the Bioworks Browser (version 3.3; ThermoFisher Scientific).
We searched the peptide mapping data using the Sequest algorithm (ThermoFisher Scientific) and did not find any modification to lysine residues.
MS/MS spectra were searched using the Sequest algorithm against Smad1 protein with dynamic modification of methionine oxidation and serine, threonine and tyrosine phosphorylation.
