Sentence examples for uses the rma algorithm from inspiring English sources

The second procedure uses the RMA algorithm [ 10, 12] to convert the raw probe level data, stored in the RGList as gMeanSignal (table 2), into a summarized microRNA gene signal.

Normalization was carried out using the RMA algorithm [44] as implemented in Bioconductor.

Probe set intensity were calculated using the RMA algorithm and normalized by the quantile method [41], [42].

We normalized the results from the mouse and rat arrays separately using the RMA algorithm [29] as implemented in Bioconductor [30].

Briefly, gene expression was determined using Affymetrix 430A 2.0 arrays (Affymetrix) as described in detail online (http://www.genome.duke.edu/cores/microarray/). CEL files were processed using the RMA algorithm [6], [7] to normalize the data.

Normalisation was conducted using the RMA algorithm in Bioconductor.

Normalization and background correction were performed using the rma algorithm of the affy package [ 42].

Raw data in each case was processed using the RMA algorithm in R Bio conductor http://www.r-project.org[ 47].

Probe set measurements were generated from quantified Affymetrix image (.CEL) files using the RMA algorithm in Bioconductor R [ 31].

Next, individual probeset intensity values were computed based on the cell intensity files using the RMA algorithm within the Bioconductor package.

The World IBC Consortium arrays were not initially quantified as in Lehmann et al.; they used the RMA algorithm, and our group used MAS 5.0.