Sentence examples for uses a reference set from inspiring English sources

This uses a reference set of sequences to train a model and then utilizes that model to predict coding regions in the genome of interest.

The index uses a reference set of highly expressed genes from a species to assess the relative usage of each codon, and the score of each gene is calculated from the frequency of use of all codons in that gene.

The CAI index uses a reference set of highly expressed genes from a species to assess the relative merits of each codon, and a score for a gene is calculated from using the frequency of all codons in that gene.

This index uses a reference set of highly expressed genes to assess the relative merits of every codon, and then determines a score for the gene or genes in question based on the use frequency of all codons in that gene [ 16].

To evaluate the signal detection quality, we used a reference set of true signals.

Using a reference set comprising all A. thaliana proteins with at least one phosphorylation site, no over- or underrepresented categories could be identified.

Recently, the relative codon usage bias (RCBS) was introduced as a novel CBI able to estimate codon bias without using a reference set.

This comparison was done using a reference set consisting of protein coding sequences available in GenBank that are putatively expressed in the bloodstream stage.

(v) A graphical representation can be made of the weight of each codon along a multiple protein alignment that has been translated to a DNA alignment using a unique reference set for all the sequences of the alignment or using a reference set for each sequence.

As a second strategy, a hidden Markov model (HMM) for each of the RNA-binding domains was constructed using a reference set of genes annotated from the "text" based search using hmmbuild in package HMMER version 3.0 [ 106].

A strength of our study is that we used a reference set, or gold standard, of articles that could be identified in a following step through a newly developed search strategy and filters.