Sentence examples for uses a multiple alignment from inspiring English sources

The program uses a multiple alignment of previously identified components of a regulon as an input and generates a consensus profile.

On the basis of maximum identity score, the sequences were selected and aligned by using a multiple alignment software program such as Clustal W. Distance matrix was generated using RDP database and the phylogenetic tree was constructed using MEGA 5 (Tamura et al. 2013).

LOHA was generated in-house and used a multiple alignment of sequences as its input.

We developed a new approach for detecting sHSPs and delineating ACDs based on an iterative Hidden Markov Model algorithm using a multiple alignment profile generated from structural data on ACD.

This profile was constructed by using a multiple alignment of amino acid sequences corresponding to the known α-helical coiled coil domains found in the Protein Data Bank (PDB) [24], release 2006.

In their "MotifMap" article [11], Xie et al. test this approach using a multiple alignment of 18 placental mammals and further improve it by considering the uncertainty of the motif occurrences when calculating the branch length.

Protein secondary structure was predicted using a multiple alignment as the input for the JPRED program.

Protein secondary structure was predicted using a multiple alignment as the input for the JPRED2 program.

Results were inputted into MODELLER [ 34] using a multiple alignment for modeling of the tertiary structure.

Additionally, hidden Markov model based searches using a multiple alignment of known members were run using the HMMER2 package [ 36].

Protein secondary structure was predicted using a multiple alignment as the input for the PHD program [ 78].