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Although Galaxy and Taverna workflow components can explicitly be defined to specify the format type (e.g., FASTA file, SAM/BAM format) of required datasets, no explicit inherent format type checking is performed to ensure that a dataset of the specified format type was provided by the user.
The program takes as input a character matrix in a NEXUS file format, for example with DNA sequences, and among the output it also generates the Nexus formatted phylogram that corresponds to the user specified parameterization.
Compressed formats can be emailed to a user specified address, enabling a quick data exchange (backup) of information which could be reused as input to avoid repetition of the same analysis.
t fluidize is a user specified parameter.
The other elements are user specified.
Then the user specified the bleach ROI.
However, the procedure allows a user specified log-likelihood function.
BHIT requires a user specifying the Minor Allele Frequency (MAF) as the prior and uses the PLINK ped and map file format.
The user specifies the structure and policies of a supply chain with a GUI-based application and then saves the supply chain description in the open, XML-based Supply Chain Modeling Language (SCML) format.
The user specifies a maximum number of clusters, Kmax.
The user specifies a threshold value and a crossing condition.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com