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In addition to the original database, only hSAGEing, GEO, and Extract-SAGE provide a tutorial and format for user defined library construction.
2. GOanna accepts either a list of IDs or a user defined file of sequences in FASTA format and does a Blast search against databases containing only annotated proteins.
Webpage of annotation module is shown in Figure 3. Input with standard vcf format or user defined tab-separated plain text are both accepted.
After initial screening, unique probes showing no cross-hybridisation potential were selected to produce an 8 × 15 K Agilent custom oligo-DNA microarray design format (Agilent Design ID = 038391), comprising 15,208 user defined features and 536 Agilent positive and negative controls.
User defined function.
User defined surface.
User defined source term.
For constructing such system, we designed a data format called UDF (User Definable Format).
Since iReport is capable of including many formats, we have used the outcome from a trio analysis generated from the Complete Genomics [ 36] NGS platform to demonstrate its utility in representing these data in a user-defined format, which contains the provenance of the underlying analysis.
Moreover, various software tools are currently under development which converts user-defined formats into these standard formats.
In general, DBMS's require that the user (some user, at least) define the format of the data very specifically.
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CEO of Professional Science Editing for Scientists @ prosciediting.com