We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses.
In microarray analyses in Senecio allopolyploids, quantitative RT-PCR confirmation rates were also approximately 65% [25], [26].
Its high performance should increase researchers' confidence in microarray analyses.
TREAT should prove especially useful in analysing microarray experiments in which there is a large amount of differential expression by testing formally for differential expression that is not only statistically significant but also biologically meaningful.
The present findings using DNA microarray analyses to detect differences in the gene expressions of deciduous and permanent teeth may be useful for dental pulp tissue engineering.
Leaf material was used for microarray analyses.
Differentially expressed genes in the microarray analyses.
MER participated in the microarray analyses.
Results from RT-PCR analyses agreed with the trends detected in the microarray analyses (Table 1).
In conclusion, the microarray analyses carried out in this study provide a useful resource of global gene expression profile of mib mutants defective in Notch signaling.
