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The research, published online Thursday in the journal Science, found that students who read a passage, then took a test asking them to recall what they had read, retained about 50 percent more of the information a week later than students who used two other methods.
To determine if the validity of the results depends on the clustering method used by PLINK, we used two other methods: HCLUST a hierarchical clustering method and smpartpca, a principal component analysis (PCA).
We used two other methods, antibody targeting and bone marrow depletion, to address eosinophils' role in colitis as described below.
Because AUC values may not be sensitive enough to express the improvement of discrimination performance, we also used two other methods: net reclassification improvement (NRI) and integrated discrimination improvement (IDI) as described by Pencina et al. (13).
They also used two other methods that yielded similar estimates of the number of Mst77Y genes: restriction enzyme digestion plus band quantification (16 copies) and computational analysis of the whole-genome sequencing traces (14 copies).
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However, in the initial analysis of 18S rRNA sequences [ 3], Ecdysozoa was statistically significant only when a paralinear distance method was used; three other methods did not yield significant bootstrap support.
We used three other methods to confirm our manual classification of hybrid individuals: the Bayesian clustering algorithms available in the program structure (v. 2.2) (Pritchard et al. 2000), the Bayesian algorithms available in the program NewHybrids v. 1.1 beta (Anderson and Thompson 2002), and principal coordinates analyses (PCoA).
A similar topology was observed using two other methods (Bayesian and maximum likelihood methods) to build the tree.
An acid-induced rise of [Ca2+]dia and [Ca2+]sys was also obtained using two other methods known to decrease pHi.
Because Pro-Maya uses a diverse set of features, including predictions using two other methods, it also performs slightly better than other methods in the absence of additional experimental data on the query positions.
To confirm that the ortholog clustering was reasonable, we compared the core gene ortholog sets produced by orthoMCL to those predicted using two other methods: a simple all-versus-all mutual best blast hit analysis, and the sets of single-copy positional homologs inferred by Mauve [ 71] after alignment of the five genome sequences.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com