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Rather than purchase an entire set of overlapping peptides, MHC-II peptide binding algorithms were used to predict candidate peptides from HEL that would bind HLA-DR15.01 HLA-DR15.01
A hidden Markov model (HMM) was used to predict candidate hrp box binding sites in the intergenic regions of 3937, including the promoter regions of HrpL-regulated genes identified in the microarray assay.
Unclassified tags were used to predict candidate novel miRNAs.
A bioinformatic strategy based on mirSVR scoring in miRBase database was used to predict candidate miRNAs, targeting the HtrA1 transcript.
Thermo Scientific Pinpoint software was used to predict candidate peptides, select fragment ions, and build the MS instrument method.
Through use of sequence-associated markers, macrosyntenic relationships were determined between field pea and five other legumes and used to predict candidate genes for salt tolerance.
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The topological and phenotype similarity was used to predict the candidate disease gene in the existing systems.
When the resolution is optimized and the "open window" in the chromatogram for an internal standard is selected, LSERs are used to predict the candidate compounds to be evaluated as the internal standard.
For example, in the next section we show how RCGs can be used to predict new candidate disease genes.
These results suggest that our approach can be used to predict which candidate miRNA would qualify as bona fide miRNAs from miRNA deep sequencing with about 90% accuracy.
This approach may be used to predict which candidate novel miRNA would qualify as bona fide miRNAs from deep sequencing data with approximately 90% accuracy.
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