Sentence examples for used to predict binding from inspiring English sources

We show how these correlations can be used to predict binding and activity properties.

The prior PWMs, constructed PWMs, and constructed DWMs were used to predict binding sites on all sequences from the original ChIP experiments.

In addition, more complex free-energy calculation methods have also been used to predict binding sites and identify energetically favorable binding site residues, including computational solvent mapping [23] and grand canonical Monte Carlo simulations [24].

STAP takes as input a set of sequences and their measured binding intensities to TFexp, a set of TF motifs (including TFexp) and learns TF-binding models that can be used to predict binding affinity of any new sequence.

Q-Sitefinder server 27 was used to predict binding site residues in modeled target sequences.

Probes with a MATscore bigger than a user specified cutoff were used to predict binding regions.

Two strategies were used to predict Sox binding sites within binding intervals.

The SOIPPA method [74] was successfully used to predict remote binding site similarities between the binding site of selective estrogen receptor modulators (SERMs) at the ERα receptor and the Sarcoplasmic Reticulum Ca2 ion channel ATPase protein (SERCA) transmembrane domain [75], thus explaining known side effects of SERMs.

(A ) The stand-alone software package of the HLA binding prediction algorithm NetMHC 3.4 was used to predict the binding affinity of all identified peptides to HLA-A02, -A03, -B35 and -B39 (four peptides are shown for simplicity).

Docking programmes are generally recognised for making reasonably successful predictions of binding modes, however, the scoring functions used to predict the binding affinity are less reliable [4 6].

These sequence alignments can be used to predict the binding sites of a transcription factor based on the experimentally determined binding sites of its template as shown in Figure 2. A predicted structure was parsed into domains by Protein Domain Parser (PDP) [ 59].