Sentence examples for used to generate phylogenetic from inspiring English sources

MEGA 6.06 program was used to generate phylogenetic tree.

Mothur was used to generate phylogenetic trees calculated with Jclass and YC indices (Fig. 5a, b).

The DNA sequence data used to generate phylogenetic tree have been published in Hughes M, Rubite RR, Blanc P, Chung K-F, Peng, C-I (2015) The Miocene to Pleistocene colonization of the Philippine archipelago by Begonia sect.

Hierarchical clustering was used to generate phylogenetic and phylometabonomic trees based on SNP and NMR data, respectively.

A matrix of pairwise genetic distances by the maximum-parsimony algorithm and the neighbor-joining method was used to generate phylogenetic trees.

The amino sequences of nine pAPEC-1-associated virulence genes (tsh, iss, cvaC, iroN, iucC, sitA, hlyF, ompT and etsA) were used to generate phylogenetic trees by the neighbor-joining method (Fig. 6 a i).

In order to obtain a statistically supported phylogenetic tree, two other alignment programs, MultAlin and DIALIGN2, were used to generate NJ phylogenetic trees, but the results were similar to those obtained with ClustalX and also showed low statistical values at the deep nodes (data not shown).

Data was used to generate a phylogenetic tree showing that all environmental products belonged to the target group.

In accordance with the Miseq MOTHUR protocols, the Jclass and YC calculators were used to generate the phylogenetic trees to visualize the similarity of the OTUs found in fecal samples of wild sables and housed sables.

The MEGA5 program using the Neighbor-Joining method with default parameters besides 1000 bootstrap replications was used to generate the phylogenetic tree (Tamura et al. 2011), which was further edited by using the Interactive Tree of Life on line tool (iTOL, http://itol.embl.de) (Letunic and Bork 2016).

The retrieved fertility restorer protein families were used to generate a phylogenetic tree using ClustalW [32].