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The best alignments were used to generate models with Modeller v.9.12 [ 29].
Over the years, information from the PDB has been used to generate models ranging from specific structural mechanisms to general statistical potentials.
It is important to understand than global accuracy comparisons (using ROC curves) are often made on 'hold-out' data, eg data that was not used to generate models in the first place, so as to test the generality of the models.
The data from this portion was then used to generate models predicting growth and development under fluctuating temperatures as described in the modelling methods section.
Orientations identical to the experiments are used to generate models in MD simulations.
Non-linear system identification is used to generate models of modes in physical structures.
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Computer simulation techniques have been used to generate model predictions for comparison with experimental data.
In the implementations, ANSYS is used to generate model deformations, and MATLAB is used to perform neural training.
As with any model, our results reflect the limitations of the model and the process used to generate model inputs.
Appendices show the SAS program used to generate model 1 and model 2, respectively (available as Supplemental Digital Content at http://links.lww.com/EDE/A887).lww.com/EDE/A887
An ODE solver with greater accuracy, ode23, was used to generate model predictions once parameters had been estimated or an optimum had been determined.
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