Sentence examples for used to extract putative from inspiring English sources

To balance the class sizes, a sphere exclusion algorithm was used to extract putative inactive data.

The perl script transcripts_to_best_scoring_ORFs.pl from Trinity was used to extract putative open reading frames from the assembled contigs.

The web based chloroplast localization prediction tools TargetP [ 21] and Predotar (version 0.5; ) were used to extract putative chloroplast localized proteins from the dataset of full non-redundant A. thaliana predicted proteins.

Hmmscan from HMMER 3.0 [ 64] together with HMMs for Carbohydrate-binding module 48 (Isoamylase N-terminal domain, CBM_40, PF02922) and Amylo-alpha-1,6-glucosidase (GDE_C, PF06202) from Pfam 27.0 [ 17] were used to extract putative branching and debranching enzyme sequences.

Selected alignments, condensed by location, were used to extract surrounding putative precursor sequences from genome.

Blast annotations obtained previously were used to extract the putative functions of the top 100 bovine and feline transcripts.

Positional homology is implied among aligned regions of the genomes, and the alignment can therefore be used to extract sets of putative positional homologs [ 28].

A script using Biopython [ 66] was then used to extract the highest-scoring putative protein sequences from the exonerate output and combine identical sequences and sequence fragments.

The complete list of 529 genes was used to extract promoter sequences for the identification of putative TFBSs.

Application of tBLASTn [ 22] identified putative pol hits which were used to extract 49,928 non-overlapping 15kb regions each centred on a match.

To search for retrotransposons, BioPerl SeqIO was used to extract the 10-kb sequences immediately upstream and downstream of each of the 100 putative Populus BAHD acyltransferases from the v2.0 genome.