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Sensitivity (or true positive rate) was used to evaluate alignment performance for BWA-SW and was calculated for query coverage and identity thresholds ranging from 90% to 100%.
The following metrics are used to evaluate alignment accuracy.
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This information is then used to evaluate alignments produced by the mapper.
Staining for cardiomyocyte markers was used to evaluate the alignment and spreading of cardiomyocytes.
RefProtDom provides a comprehensive set of full-length UniProt proteins that can be used to evaluate domain alignment accuracy.
Two parameters, contiguity and completeness as described by Martin and Wang [ 85] were used to evaluate the alignment results.
Polarizing light microscopy was used to evaluate the alignment of collagen fibers in Picrosirius red-stained sections.
This evaluation was also used to evaluate FT alignments versus spectral comparison in [42].
As an alternative to heuristic scoring schemes, there have been also research efforts to develop probabilistic models for sequence alignment that can be used to evaluate and compare potential alignments and to estimate the symbol-to-symbol alignment probabilities.
Only manual MeSH to VCM alignments were already validated, and used to evaluate ICD10 to VCM alignments, which could in turn be used to validate automatic MeSH to VCM alignments.
Simulated data were used to evaluate the performance of alignment in various conditions.
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CEO of Professional Science Editing for Scientists @ prosciediting.com