Recent technologies have enabled us to convert database formats to RDF tuples, and many visualization and search strategies using RDF data are just emerging.
The D2R tool [25] is used to convert to the MEDLINE relational database to RDF schema and combined to the Chem2Bio2Rdf [9], which supports data visualization and complex query retrievals.
ProteinLynx Global Server software (V2.2.5) was used to convert raw data to peak lists for database searching.
The deviation of mass values determined from charge pairs is used to convert mass precision to mass accuracy for subsequent database search.
A database of reference values by Hologic was used to convert BMD measurements to Z- and T-scores.
The Galaxy Database Liftover Convert Genome Coordinates tool was used to convert the PhastCons Placental Mammal Conserved Elements, 28-way Multiz Alignment ([ 41- 43]), genomic intervals from hg18 to hg17.
Lists of RefSeq IDs specific for 30 human tissues were retrieved from the TIGER database [ 36], and Biomart Ensembl was used to convert Refseq IDs in Entrez IDs.
Protein Assembler was used to convert spectral counts to average peptide spectral matches (APSMs), which takes into account peptides, which match more than one protein in the database.
AWS is also adding the capability to convert database instances with "Standard Storage" to "Provisioned IOPS".
The resulting data was converted to XML and used to populate MySQL databases for each genome.
